Ms Haley Stone

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Haley Stone is a Research Associate at the CRUISE Lab in the School of Computer Science and Engineering at UNSW. Her research focuses on epidemic modeling, machine learning, and computational biology, with interests spanning SEIR models, agent-based simulation, graph-based inference, and phylogenetics. She completed her PhD at the Kirby Institute, where she worked on pandemic preparedness and the integration of genomic and epidemiological data to model infectious disease dynamics.

Journal articles | 2025

Jindal M; Stone H; Lim S; MacIntyre CR, 2025, 'A Geospatial Perspective Toward the Role of Wild Bird Migrations and Global Poultry Trade in the Spread of Highly Pathogenic Avian Influenza H5N1', Geohealth, 9,

Journal articles | 2025

Quigley AL; Kunasekaran M; Stone H; Honeyman D; Notaras A; Lim S; MacIntyre R, 2025, 'The impact of the cruise ship Coral Princess on COVID-19 transmission in regional Western Australia in 2022', Journal of Travel Medicine, 32,

Journal articles | 2025

Quigley DA; Honeyman MD; Stone MH; Dawson DR; MacIntyre PCR, 2025, 'EPIWATCH, an artificial intelligence early-warning system as a valuable tool in outbreak surveillance', International Journal of Infectious Diseases, 152, pp. 107579 - 107579,

Journal articles | 2024

Hutchinson D; Li B; Lim S; Stone H; MacIntyre CR, 2024, 'Using EPIWATCH® open-source surveillance to describe the epidemiology of lumpy skin disease outbreaks in South and Southeast Asia (2022–2023)', Australian Veterinary Journal, 102, pp. 524 - 529,

Journal articles | 2023

Chen X; Kunasekaran MP; Hutchinson D; Stone H; Zhang T; Aagerup J; Moa A; MacIntyre CR, 2023, 'Enhanced EPIRISK tool for rapid epidemic risk analysis', Public Health, 224, pp. 159 - 168,

Journal articles | 2023

Hutchinson D; Kunasekaran M; Stone H; Chen X; Quigley A; Moa A; Macintyre CR, 2023, 'Healthcare Workers' SARS-CoV-2 Infections in Four Hospital Outbreaks during Delta Variant Prevalence in Sydney, Australia', Nursing Research and Practice, 2023, pp. 1806909,

Journal articles | 2023

MacIntyre CR; Chen X; Kunasekaran M; Quigley A; Lim S; Stone H; Paik HY; Yao L; Heslop D; Wei W; Sarmiento I; Gurdasani D, 2023, 'Artificial intelligence in public health: the potential of epidemic early warning systems', Journal of International Medical Research, 51,

Journal articles | 2023

Stone H; Heslop D; Lim S; Sarmiento I; Kunasekaran M; Raina MacIntyre C, 2023, 'Open-Source Intelligence for Detection of Radiological Events and Syndromes Following the Invasion of Ukraine in 2022: Observational Study', Jmir Infodemiology, 3,

Journal articles | 2023

Stone H; Notaras A; Chen R; Edgeworth J; Quigley A, 2023, 'Highly Pathogenic Avian Influenza (H5N1) in humans after the emergence of clade 2.3.4.4b in 2020', Global Biosecurity, 5,

Journal articles | 2022

Kunasekaran M; Hutchinson D; Stone H; Chen X, 2022, 'Unknown skin disease among Senegalese fishermen', Global Biosecurity, 4,

Journal articles | 2022

Quigley A; Nguyen PY; Stone H; Heslop DJ; Chughtai AA; MacIntyre CR, 2022, 'Estimated Mask Use and Temporal Relationship to COVID-19 Epidemiology of Black Lives Matter Protests in 12 Cities', Journal of Racial and Ethnic Health Disparities, 10,

Journal articles | 2022

Quigley A; Stone H; Nguyen PY; Chughtai AA; MacIntyre CR, 2022, 'COVID-19 outbreaks in aged-care facilities in Australia', Influenza and other Respiratory Viruses, 16, pp. 429 - 437,

Journal articles | 2021

Bahl P; De Silva C; Bhattacharjee S; Stone H; Doolan C; Chughtai AA; Macintyre CR, 2021, 'Droplets and Aerosols Generated by Singing and the Risk of Coronavirus Disease 2019 for Choirs', Clinical Infectious Diseases, 72, pp. E639 - E641,

Journal articles | 2021

Chawla D; Trent M; Moa A; Stone H; MacIntyre R, 2021, 'An analysis of COVID-19 outbreaks in schools in South and Southwestern United States using open-source data', Global Biosecurity, 3,

Journal articles | 2021

Hutchinson D; Williams H; Stone H, 2021, 'COVID-19 Variants of Concern in Australia, September 2020-April 2021', Global Biosecurity, 3,

Journal articles | 2021

Kunasekaran M; Hutchinson D; Stone H; Chen X; Moa A, 2021, 'Is the Delta Plus Variant (B.1.617.2/AY1) more serious than the Delta Variant?', Global Biosecurity, 3,

Journal articles | 2021

Lim S; MacIntyre R; Nguyen P; Quigley A; Stone H, 2021, 'Cruise Ship Travel and the Spread of COVID-19 – Australia as a Case Study', International Journal of Travel Medicine and Global Health, 9, pp. 10 - 18,

Journal articles | 2021

Quigley AL; Stone H; Nguyen PY; Chughtai AA; MacIntyre CR, 2021, 'Estimating the burden of COVID-19 on the Australian healthcare workers and health system during the first six months of the pandemic', International Journal of Nursing Studies, 114, pp. 103811,

Journal articles | 2021

Quigley AL; Stone H; Yen Nguyen P; Chughtai AA; Raina MacIntyre C; MacIntyre R; Nguyen P, 2021, 'Erratum to “Estimating the burden of COVID-19 on the Australian healthcare workers and health system during the first six months of the pandemic” [International Journal of Nursing Studies, 114 (2021), 103811] (International Journal of Nursing Studies (2021) 114, (S0020748920302972), (10.1016/j.ijnurstu.2020.103811))', International Journal of Nursing Studies, 121, pp. 104031,

Journal articles | 2021

Stone H; Lim S; Kunasekaran M; Nunes-Vaz R, 2021, 'Greater Sydney SARS-CoV-2 Observations from the 16th of June to the 13th of July', Global Biosecurity, 3,

Journal articles | 2021

Stone H; Lim S; Kunasekaran M, 2021, 'Greater Sydney SARS-CoV-2 Observations from the 16th of June to the 13th of July', Global Biosecurity,

Journal articles | 2021

Williams H; Hutchinson D; Stone H, 2021, 'Watching Brief: The evolution and impact of COVID-19 variants B.1.1.7, B.1.351, P.1 and B.1.617', Global Biosecurity, 3,

Journal articles | 2020

Stone H; Moa A; Macintyre R; Chughtai A, 2020, 'Using open source data to estimate the global epidemiology of pertussis', Global Biosecurity, 2,
Preprints | 2025

Du J; Stone H; Yang Y; Desai A; Xue H; Züfle A; MacIntyre CR; Salim FD, 2025, BLUE: Bi-layer Heterogeneous Graph Fusion Network for Avian Influenza Forecasting,

Preprints | 2025

Stone H; Du J; Xue H; Scotch M; Heslop D; Züfle A; MacIntyre CR; Salim F, 2025, A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models,

Preprints | 2024

Lim S; Jindal M; Stone H; McIntyre R, 2024, A geospatial perspective towards the role of migratory birds and poultry in the spread of Avian Influenza,

Preprints | 2024

Stone H; Jindal M; Lim S; Dawson R; Quigley A; Scotch M; MacIntyre R, 2024, Potential Pathways of Spread of Highly Pathogenic Avian Influenza A/H5N1 Clade 2.3.4.4b Across Dairy Farms in the United States,

Preprints | 2022

Stone H; Heslop D; Lim S; Sarmiento I; Kunasekaran M; MacIntyre CR, 2022, Open-Source Intelligence for Detection of Radiological Events and Syndromes Following the Invasion of Ukraine in 2022: Observational Study (Preprint),

Preprints | 2021

NWACHUKWU C; MacIntyre CR; Stone H, 2021, Epidemiological and phylogenetic analyses of COVID-19 in Africa using open-source sequence data.,

Preprints | 2020

Quigley AL; Nguyen PY; Stone H; Heslop D; Chughtai AA; MacIntyre R, 2020, Estimated Mask Use and Temporal Relationship to COVID-19 Epidemiology of Black Lives Matter Protests in 12 Cities,

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Ms Haley Stone

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